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  • Genome-wide search and structural and functional analyses for late embryogenesis-abundant (LEA) gene family in poplar
  • Construction of a chromosome-level genome and variation map for the Pacific oyster Crassostrea gigas
  • BedSect: An Integrated Web Server Application to Perform Intersection, Visualization, and Functional Annotation of Genomic Regions From Multiple Datasets.
  • Data on genome sequencing, assembly, annotation and genomic analysis of Rhodococcus rhodochrous strain SPC17 isolated from Lonar Lake.
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Genome-wide search and structural and functional analyses for late embryogenesis-abundant (LEA) gene family in poplar

Genome-wide search and structural and functional analyses for late embryogenesis-abundant (LEA) gene family in poplar

March 14, 2021March 7, 2021 by Jennie Bradley
The Late Embryogenesis-Abundant (LEA) gene households, which play vital roles in regulation of tolerance to abiotic stresses, broadly exist in larger vegetation. Poplar is a tree species that has essential ecological and financial values. But systematic research on the gene family haven’t been reported but in poplar. On the idea of genome-wide search, we recognized 88 LEA genes from Populus trichocarpa and renamed them as PtrLEA. The PtrLEA genes have fewer introns, and their promoters include extra cis-regulatory components associated to abiotic stress tolerance.
Our outcomes from comparative genomics indicated that the PtrLEA genes are conserved and homologous to associated genes in different species, resembling Eucalyptus robusta, Solanum lycopersicum and Arabidopsis. Using RNA-Seq knowledge collected from poplar underneath two circumstances (with and with out salt therapy), we detected 24, 22 and 19 differentially expressed genes (DEGs) in roots, stems and leaves, respectively. Then we carried out spatiotemporal expression evaluation of the 4 up-regulated DEGs shared by the tissues, constructed gene co-expression-based networks, and investigated gene perform annotations.
An absence of the entire pig proteome has left a niche in our data of the pig genome and has restricted the feasibility of utilizing pigs as a biomedical mannequin. We developed the tissue-based proteome map utilizing 34 main regular pig tissues. A complete of 5841 unknown protein isoforms have been recognized and systematically characterised, together with 2225 novel protein isoforms, 669 protein isoforms from 460 genes symbolized starting with LOC, and 2947 protein isoforms with out clear NCBI annotation in present pig reference genome. These newly recognized protein isoforms have been functionally annotated by way of profiling the pig transcriptome with high-throughput RNA sequencing of the identical pig tissues, additional bettering the genome annotation of the corresponding protein-coding genes.
Combining the well-annotated genes which have parallel expression sample and subcellular witness, we predicted the tissue-related subcellular parts and potential perform for these unknown proteins. Finally, we mined 3081 orthologous genes for 52.75% of unknown protein isoforms throughout a number of species, referring to 68 KEGG pathways in addition to 23 illness signaling pathways. These findings present worthwhile insights and a wealthy useful resource for enhancing research of pig genomics and biology, in addition to biomedical mannequin utility to human medication. To additional characterize the construction of metabolites, two approaches have been integrated into our technique, which have been structural motif search mixed with impartial loss scanning and metabolite affiliation community.

Expanding the Coverage of the Metabolic Landscape in Cultivated Rice with Integrated Computational Approaches

Genome-scale metabolomics evaluation is more and more used for pathway and perform discovery in the post-genomics period. The nice potential provided by developed mass spectrometry (MS)-based applied sciences has been hindered, since solely a small portion of detected metabolites have been identifiable up to now. To tackle the essential problem of low identification protection in metabolomics, we adopted a deep metabolomics evaluation technique by integrating superior algorithms and expanded reference databases. The experimental reference spectra and in silico reference spectra have been adopted to facilitate the structural annotation.

Untargeted metabolomics evaluation was carried out on 150 rice cultivars utilizing extremely efficiency liquid chromatography-quadrupole-Orbitrap mass spectrometer. Consequently, a complete of 1939 of 4491 metabolite options in MS/MS spectral tag (MS2T) library have been annotated, representing an extension of annotation protection by an order of magnitude on rice. The differential accumulation patterns of flavonoids between indica and japonica cultivars have been revealed, particularly O-sulfated flavonoids. A collection of closely-related flavonolignans have been characterised, including additional proof for the essential position of tricin-oligolignols in lignification. Our research supplies an amazing template in the exploration of phytochemical variety for extra plant species.

 Genome-wide search and structural and functional analyses for late embryogenesis-abundant (LEA) gene family in poplar

Linking clinotypes to phenotypes and genotypes from laboratory take a look at outcomes in complete bodily exams

In this work, we aimed to show tips on how to make the most of the lab take a look at outcomes and different scientific info to help precision medication analysis and scientific choices on complicated illnesses, with the help of digital medical file amenities. We outlined “clinotypes” as scientific info that may very well be noticed and measured objectively utilizing biomedical devices. From well-known ‘omic’ drawback definitions, we outlined issues utilizing clinotype info, together with stratifying patients-identifying sub cohorts for future research, mining vital associations between clinotypes and particular phenotypes-diseases, and discovering potential linkages between clinotype and genomicinfo.
We solved these issues by integrating public omic databases and making use of superior machine studying and visible analytic methods on two-year well being examination information from a big inhabitants of wholesome southern Chinese people (measurement n = 91,354). When growing the answer, we fastidiously addressed the lacking info, imbalance and non-uniformed knowledge annotation points. Our outcomes confirmed sturdy potential connectivity between the omics info and the scientific lab take a look at info.

Genomic DNA from Rat Normal Tissue: Lung

D1434152 Biochain 100 ug
EUR 282
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

96 Well Lung Tumor Genomic DNA Plate

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Human Genomic DNA

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Human Genomic DNA

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Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA from Asthma: Lung, from a single donor

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Genomic DNA from Bronchitis: Lung, from a single donor

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Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA from Emphysema: Lung, from a single donor

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EUR 446
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA from Pneumonia: Lung, from a single donor

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EUR 446
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA from Lupus: Lung, from a single donor

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Human Brain Genomic DNA

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Description: kits suitable for this type of research

Genomic DNA - Human Male

D1234999-G01 Biochain 100 ug
EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Human Female

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EUR 188
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Genomic DNA Kit

20-abx098076 Abbexa
  • EUR 439.00
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  • 200 rxns
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FFPE and Frozen Matching Pair Genomic DNA: Human Tumor Tissue: Lung

D8235152-FP Biochain 2 x 2 ug
EUR 1957
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA from Liver Cirrhosis: Lung, from a single donor

D1236152Lcs Biochain 50 ug
EUR 446
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA from Pulmonary embolism: Lung, from a single donor

D1236152Ld-5 Biochain 50 ug
EUR 446
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA from Human Adult Normal Tissue: Lung, from a single donor

D1234152 Biochain 100 ug
EUR 282
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA from Human Tumor Tissue: Lung Tumor, from a single donor

D1235152 Biochain 50 ug
EUR 446
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Plant Genomic DNA Kit

20-abx098077 Abbexa
  • EUR 411.00
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  • 200 rxns
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Bacteria Genomic DNA Kit

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  • EUR 105.00
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Micro Genomic DNA Kit

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  • 2 rxns
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Blood Genomic DNA Kit

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EUR 272

Plant Genomic DNA Kit

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EUR 523

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Genomic DNA Isolation Kit

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Soil Genomic DNA Kit

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EUR 561

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Insect Genomic DNA Kit

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Mollusc Genomic DNA Kit

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Yeast Genomic DNA Kit

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Fungal Genomic DNA Kit

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Genomic DNA Isolation Kit

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Genomic DNA - Mouse Male

D1334999-G01 Biochain 100 ug
EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Mouse Female

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EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Rat Male

D1434999-G01 Biochain 100 ug
EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Rat Female

D1434999-G02 Biochain 100 ug
EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Dog Male

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EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Dog Female

D1734999-G02 Biochain 100 ug
EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Rabbit Male

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EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Rabbit Female

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EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Porcine Male

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EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Porcine Female

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EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Bovine Male

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EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Bovine Female

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Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Chicken Male

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EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Chicken Female

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EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Hamster Male

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EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Hamster Female

D1H34999-G02 Biochain 100 ug
EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Horse Male

D1O34999-G01 Biochain 100 ug
EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Horse Female

D1O34999-G02 Biochain 100 ug
EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA Extraction Kit

K5016005 Biochain 1 kit
EUR 329

Genomic DNA Isolation Kit

55R-1362 Fitzgerald 50 assays
EUR 385
Description: Genomic DNA Isolation Kit for use in the research laboratory

Fully CpG Methylated Human Genomic DNA

X10000 EpiGentek 10 µg/100 µl Ask for price
Description: The best epigenetics products

Genomic DNA Extraction and Purification

EP10012 Neuromics 100 Tests
EUR 505

Genomic DNA Extraction KitAnimal Tissue

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ISOLATE II Genomic DNA Kit

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Plant Genomic DNA extraction buffer

20-abx098075 Abbexa
  • EUR 286.00
  • EUR 105.00
  • 100 ml
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Marine Animal Genomic DNA Kit

20-abx098079 Abbexa
  • EUR 105.00
  • EUR 244.00
  • 2 rxns
  • 50 rxns

FFPE Tissue Genomic DNA Kit

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Zenoquick Genomic DNA Purification Kit

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EUR 631

Zenoprep Genomic DNA Purification Kit

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AccuRT Genomic DNA Removal Kit

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EUR 82

Bacterial Genomic DNA Isolation Kit

K309-100 Biovision
EUR 376

Genomic DNA - Cynomolgus Monkey Male

D1534999-Cy-G01 Biochain 100 ug
EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Cynomolgus Monkey Female

D1534999-Cy-G02 Biochain 100 ug
EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Rhesus Monkey Male

D1534999-G01 Biochain 100 ug
EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Rhesus Monkey Female

D1534999-G02 Biochain 100 ug
EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Guinea Pig Male

D1G34999-G01 Biochain 100 ug
EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Genomic DNA - Guinea Pig Female

D1G34999-G02 Biochain 100 ug
EUR 188
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

100 BP DNA LADDER, 500UL PER KIT

M-DNA-100BP CORNING 1/pk
EUR 73
Description: Bioscience Mol Bio; DNA Ladder

1 KB DNA LADDER, 500UL PER KIT

M-DNA-1KB CORNING 1/pk
EUR 70
Description: Bioscience Mol Bio; DNA Ladder

FFPE Genomic DNA - Human Tumor Tissue: Breast

D2235086 Biochain 2 ug
EUR 821
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

FFPE Genomic DNA - Human Tumor Tissue: Colon

D2235090 Biochain 2 ug
EUR 821
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

FFPE Genomic DNA - Human Tumor Tissue: Pancreas

D2235188 Biochain 2 ug
EUR 821
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

FFPE Genomic DNA - Human Tumor Tissue: Stomach

D2235248 Biochain 2 ug
EUR 821
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

FFPE Genomic DNA - Human Tumor Tissue: Uterus

D2235274 Biochain 2 ug
EUR 821
Description: Can be used for various studies in the realm of gene expression, both normal and pathological. It is an excellent control and suitable for educational purposes.

Rapid Fungal Genomic DNA Isolation Kit

FT71415 Bio Basic 50Preps
EUR 76.64

Genomic DNA Extraction Mini KitPlant Tissue

FYG103-100P Yeastern Biotech 100 Preps Ask for price

Easy3-Plant Genomic DNA Isolation Kit

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Easy3-Plant Genomic DNA Isolation Kit

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Rapid Bacteria Genomic DNA Isolation Kit

BS8225 Bio Basic 50Preps
EUR 76.64

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BS8227 Bio Basic 50Preps
EUR 76.64

Rapid Blood Genomic DNA Extraction Kit

BT4782 Bio Basic 50Preps
EUR 76.64

Rapid Animal Genomic DNA Extraction Kit

AT4780 Bio Basic 10Preps
EUR 69.03

Rapid Animal Genomic DNA Extraction Kit

AT4781 Bio Basic 50Preps
EUR 126.13
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Prediction and Association-finding). At the information preprocessing step, we dealt with the lacking worth problem with predicted accuracy of 0.760. We curated 12,635 clinotype-gene associations. We discovered 147 Associations between 147 continual diseases-phenotype and clinotypes, which improved the illness predictive efficiency to AUC (common) of 0.967. We mined 182 vital clinotype-clinotype associations amongst 69 clinotypes.  The outcomes additional emphasised the must make the most of and combine the scientific info, particularly the lab take a look at outcomes, in future PheWas and omic research. Furthermore, it confirmed that the clinotype info might provoke an alternate analysis path and function an impartial area of information to help the well-known ‘phenome’ and ‘genome’ researches.
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Construction of a chromosome-level genome and variation map for the Pacific oyster Crassostrea gigas
From e-voucher to genomic data: Preserving archive specimens as demonstrated with medically important mosquitoes (Diptera: Culicidae) and kissing bugs (Hemiptera: Reduviidae)

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Recent Posts

  • Plasmid
  • Polymerase Chain Reaction (PCR)
  • Mitosis
  • Chromosome-level genome assembly of the common chaffinch (Aves: Fringilla Coelebs): a valuable resource for evolutionary biology
  • A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome

Categories

  • Antibodies
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  • BedSect: An Integrated Web Server Application to Perform Intersection, Visualization, and Functional Annotation of Genomic Regions From Multiple Datasets.
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